Background Resources
New to proteomics? No problem! We have assembled a list of good resources for learning about mass-spectrometry based proteomics quickly, from videos to articles to short courses. Just pick the format you like best.
General Proteomics
These external links provide some resources to get up to speed on mass spectrometry-based proteomics fast
Short Introductory articles
π βA beginnerβs guide to mass spectrometryβbased proteomicsβ (2023) Sinha & Mann
π βAn introduction to mass spectrometry-based proteomicsβ (2023) Shuken (PDF)
Short Introductory videos
π¬ βMass Spectrometry for Proteomicsβ Matt Padula
π¬ βTop down vs bottom up proteomicsβ Alan Doucette
π¬ βFundamentals of peptide and protein mass spectrometryβ Steve Carr (Broad Institute)
π¬ βIntroduction to Database Searching using Mascotβ John Cottrell (Matrix Science)
Available courses
(These are mostly in-person recurring courses)
π§βπ§ ASMS
π§βπ§ MaxQuant
π§βπ§ May Institute
π§βπ§ Skyline
π§βπ§ Galaxy-P
π§βπ§ EBI
π§βπ§ Brixen Proteomics
Books
π ASMS Learning R for Mass Spectrometrists
Other Resources
π ELIXIR TeSS (Training eSupport System)
Glycoproteomics
These links provide some resources to get up to speed on mass spectrometry-based glycoproteomics fast
Books
π NCBI Bookshelf - Essentials of Glycobiology
Short Introductory articles
π βThe Hitchhikerβs guide to glycoproteomicsβ (2021) Oliveira * Kolarich
π βGlycoproteomics Nature Primerβ (2022) Bagdonaite * Scott
π βGlycomic and glycoproteomic analysis of glycoproteins-a tutorialβ (2017) Shajahan*Azadi
π βCritical considerations in N-glycoproteomicsβ (2023)
Videos (webinars, lectures):
π¬ βGlySpace Educationβ
π¬ βSIB YouTube Channel (for glyco)β
π¬ βGlySpace webinar seriesβ
π¬ βTranslational clinical glycoproteomics in practice | Brukerβ
π¬ βGordan Laucβs YouTube Glyco-education channelβ
Blogs
π Glycopedia (Serge Perez, Grenoble)
π Glyco-knowledge vignettes (Rick Cummings, Harvard)
Tutorials on specific tools
π FragPipe
π ProteinProspector
Available courses
(These are mostly in-person recurring courses)
π§βπ§ Summer school in biomedical glycoscience in Grenoble
π§βπ§ GlycoTwinning training in Portugal
π§βπ§ Summer course on glycosciences in the Netherlands
π§βπ§ U. Georgia CCRC training courses in the US
π§βπ§ ASMS
Other Resources
π ELIXIR TeSS (Training eSupport System)
π Interactive map of web-based glycoinformatics resources (Expasy)
π GlycoNet training documents
Benchmarking efforts
π HUPO Human glycomics initiative
π 1st HGI study (2021)
π 1st HGI study results (2021)
π 2nd HGI study (2021)
π NIST Interlaboratory Study on Glycosylation Analysis of Monoclonal Antibodies: Comparison of Results from Diverse Analytical Methods (2020)